Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs10518696 | chr15:40898017 | C/T | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs10766369 | chr11:17018844 | C/G | 2.55E-14 | 216 | 3.17 | 7.77 | 9.47 | KM Plot |
| BLCA | rs10768074 | chr11:34444511 | A/C | 1.86E-7 | 216 | 11.58 | 7.3 | 2.07 | KM Plot |
| BLCA | rs10791815 | chr11:65001310 | C/G | 1.02E-5 | 209 | 10.12 | 7.25 | 0.5 | KM Plot |
| BLCA | rs10836232 | chr11:34456625 | C/T | 0.000134 | 215 | 11.1 | 7.22 | 2.07 | KM Plot |
| BLCA | rs10836235 | chr11:34460704 | C/T | 0.000153 | 209 | 10.7 | 7.37 | 2.07 | KM Plot |
| BLCA | rs10882989 | chr10:99449591 | G/T | 2.79E-8 | 216 | 9.03 | 13.17 | 2.7 | KM Plot |
| BLCA | rs10937643 | chr4:5433545 | C/T | 2.91E-6 | 216 | 10.62 | 6.93 | 5.13 | KM Plot |
| BLCA | rs11032697 | chr11:34456711 | C/T | 0.000107 | 213 | 11.47 | 7.3 | 2.07 | KM Plot |
| BLCA | rs11032701 | chr11:34462778 | T/C | 2.42E-5 | 214 | 10.4 | 8.33 | 3.3 | KM Plot |
| BLCA | rs11032717 | chr11:34501064 | C/A | 1.2E-5 | 214 | 10.7 | 8.47 | 2.68 | KM Plot |
| BLCA | rs11046048 | chr12:21592200 | A/C | 0 | 216 | 9.97 | 8.72 | 1.25 | KM Plot |
| BLCA | rs11052011 | chr12:32607363 | A/G | 5.32E-5 | 216 | 6.37 | 9.03 | 10.72 | KM Plot |
| BLCA | rs11081182 | chr18:5280470 | A/T | 6.17E-7 | 215 | 9.03 | 13.05 | 4.85 | KM Plot |
| BLCA | rs11081184 | chr18:5282851 | G/C | 6.17E-7 | 215 | 9.03 | 13.05 | 4.85 | KM Plot |